You are jumping the gun a bit muzzy. My benchmark page is FAR from complete, and I never said that FreeBSD is better than Windows for 3d performance. As I said, I plan on benchmarking more games, and I also plan on doing more Quake benchmarks with various AA/AF settings turned on.
As for the speculation about refreshrate limiting framerates in FreeBSD, they were not. I immediately suspected this myself, and made sure the vertical sync was turned off. Also, when I changed the lighting settings from "Lightmap" to "Vertex", the framerate in FreeBSD jumped to 96fps at 640x480. My monitor runs at 65-85mhz depending on the resolution.